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Data sets and code for the BCSS "Bayes with JAGS" tutorial

  This page has links to download ZIP files with data sets and code shown in the JAGS tutorial.

indicates ZIP files that include NIMBLE code.

Sorted by tutorial page

A simple model with just one parameter
   orangutan_abundance.zip

Linear models :

Occupancy modelling :

Abundance from capture-recapture data

Abundance from replicate count data

Community (multi-species) models

Open population models

 

Sorted by data set

Black bears in up-state New York
   Bears.zip (7KB)

Chiew Larn bird data (MSOM with covariates)
  ChiewLarn_birds.zip
  MSOM_ChiewLarn_richness.zip

Crossbills in Switzerland
  Dynamic_occupancy_crossbills.zip (28KB)

Dipper data from France
  Dippers_survival_CJS.zip
  Dippers_survival_CJS_m-array.zip

Galton's parent and child heights data
   galton_simple_regression.zip (3KB)

Geckos - simulated data
  SCR_multicatch.zip (3KB)

Kanha tiger camera-trapping data
   KanhaTigers.zip (4KB)

Leopard occupancy before and after fire
   leopards_and_fire.zip (4KB)

Multi-method multi-scale occupancy - simulated data
  Multimethod_multiscale_occupancy.zip (13KB)

New England (USA) ants
  MSOM_Ants_bog.zip

North American Breeding Bird Survey data
  MSOM_NABBS_basic.zip (16KB)

Orangutan abundance (fictional data)
   orangutan_abundance.zip

Rails occupancy (simulated data)
  rails_2sps_occupancy.zip (6KB)

Salamanders occupancy data
   salamanders.zip (2KB)

Socks-in-the-Box activity
   soxInBox_logistic_regression.zip (5KB)
   soxInBox_hierarchical.zip (7KB)

Stoats DNA data from secr package
   stoats_SCR.zip (7KB)

Swedish butterflies
  MSOM_butterfly_DA.zip

Swiss Breeding Birds
  MSOM_SwissBird_richness.zip

"Tigs" data from makeJAGSmask package
   SCRpatch_raster.zip (6KB)

Willow tits data from the Swiss Breeding Bird survey
   willowtits_siteCovs.zip (7KB)
   willowtits_surveyCovs.zip (7KB)

 

Page updated 10 April 2022 by Mike Meredith